PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020724.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 159aa    MW: 18186.6 Da    PI: 10.0518
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020724.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.3e-3382140159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg+H h+
  CCG020724.1  82 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGIVVTTYEGTHSHQ 140
                  59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-3467140IPR003657WRKY domain
SuperFamilySSF1182909.42E-3074141IPR003657WRKY domain
PROSITE profilePS5081129.75777142IPR003657WRKY domain
SMARTSM007744.1E-3882141IPR003657WRKY domain
PfamPF031069.9E-2783140IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSLNMVPSSY GSTDLEGAKG NGFLGLMQEM EAPAASLNVD NISQNRAFVG SVSEGRVEKK  60
RGEKKIRKPK YAFQTRSQVD ILDDGYRWRK YGQKAVKNNK FPRSYYRCTH QGCNVKKQVQ  120
RLTKDEGIVV TTYEGTHSHQ IEKSTDNFEH ILRQMQIYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A9e-2972141776Probable WRKY transcription factor 4
1wj2_A9e-2972141776Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036106.11e-118PREDICTED: probable WRKY transcription factor 75
SwissprotQ9FYA26e-56WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLB9GVW04e-96B9GVW0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16750.11e-95(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.19e-57WRKY DNA-binding protein 75